近期活动

Colloquium

Quantitative Studies of Bacteria Chemotaxis Behavior

Qi Ouyang, Peking University
Wed, 2019-06-19 15:00 - 16:00
Room 203, New Physics Building

Most biological organisms have the ability to sense their chemical environment and direct their motion toward attractants and away from repellents. This chemotactic behavior has been studied intensively in recent years. Among them, bacteria E. Coli. Chemotaxis is one of the best-studied systems in biology; it serves as an ideal model system in quantitative biology. In this talk, we will report our quantitative studies in recent years on E. Coli. chemotactic behavior under different spatiotemporal varying environments using both experimental and theoretical methods. In experiments, we developed microfluidic systems to accurately control the spatiotemporal patterns of bacteria environment, and observed the behavior of bacteria in the defined environment. The data collected the experiments was used to test the dynamics model of bacteria chemotaxis mechanism. New bacteria chemotactic behaviors were observed, and the new theoretical model was proposed.

References 

G.W. Si, T.L. Wu, Qi Ouyang, Y.H. Tu, Pathway-Based Mean-Field Model for Escherichia coli Chemotaxis, Phys. Rev. Lett. 109, 408101 (2012).

X.J Zhu, G.W. Si, N.P. Deng, Qi Ouyang, T.L Wu, Z.R. He, L.L. Jiang, C.X. Luo, and Y.H Tu, Frequency-dependent Escherichia coli chemotaxis behavior,Phys. Rev. Lett 108, (2012) 128101.

Q.X. Cai, Z.J. Li, Qi Ouyang, C.X. Luo, V. Gordon, Singly Flagellated Pseudomonas aeruginosa Chemotaxes Efficiently by Unbiased Motor Regulation, mBio, 7 (2) (2016) E00013-16.

Z.J. Li, Q.X. Cai, X.Q. Zhang, G.W. Si, Qi Ouyang, C.X. Luo, Y.H. Tu, Barrier crossing in Escherichia Coli chemotaxis, Phys. Rev. Lett., 118 (2017) 098101.

X.Q. Zhang, G.W. Si, Y.M. Dong, K.Y Chen, Qi Ouyang, C.X. Luo, Y.H. Tu, Escape band in Eschrichia Coli chemotaxis in opposing attractant and nutrient gradients, PNAS, (2018) www.pnas.org/cgi/doi/10.1073/pnas/808200116.

欧阳颀,中国科学院院士。北京大学博雅讲席教授。现任北京大学物理学院副院长,学术委员会主任;北京大学理论生物学中心副主任,北京大学前沿交叉学科研究院理论生物学中心学术委员会主任。

1982年于清华大学化学与化学工程系获学士学位;1989年于法国波尔多第一大学获博士学位。1989年到1995年在美国得克萨斯州立大学奥斯汀分校非线性动力学中心做博士后研究员及研究员。1995年到1996年在法国尼斯非线性中心做客座研究员。1996年到1998年在美国日本电气公司研究中心做研究科学家。1998年受聘于北京大学物理学院,任教授。同年被评为第一届长江特聘教授。

研究方向:非线性动力学、斑图动力学、生物物理、定量系统生物学、生物调控网络动力学,生物微流体技术,合成生物学与冷冻电镜结构生物学。

学术成就:欧阳颀实验室主要应用非线性动力学、复杂系统理论与统计物理的概念与研究方法探索生物控制网络的特性,包括网络拓扑学特性,网络动力学特性,网络功能特性,以及三种特性之间的相互制约关系。并试图将研究中所总结的规律应用到合成生物学领域,开展以理性设计为原则的合成生物学研究。近年来涉足冷冻电镜结构生物学研究并取的重要成果。